PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G064400.1
Common NameB456_004G064400, LOC105793538
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 256aa    MW: 28361.7 Da    PI: 6.3651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G064400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.6e-10168211755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Gorai.004G064400.1 168 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 211
                         6779*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-12159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-12159215No hitNo description
PROSITE profilePS5088815.408161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7168211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MALAKDPICS VQTSTLLEDG SDGFIFQAVN YQPEQPHSLI NFKDSGYDNF IRGTNGSLLS  60
FEQNEKGRQH TTCLRTSGYK HGHSMVDQWD PRAVEDFSCF ETASNGDWLY YDEAVFADSS  120
SIQDPGSPAA DLKRPHVGGS NQALKKQCTN ETKKGKTKSE PSKEPQSIAA KNRRERISER  180
LKILQELVPN GSKVDLVTML EKAISYVKFL QLQVKVLATD EFWPVQGGKA PDISQVREAI  240
DAILSSQKQR NSTSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477890.10.0PREDICTED: putative transcription factor bHLH086
SwissprotQ9FJ006e-61BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A0D2R0230.0A0A0D2R023_G
STRINGPOPTR_0004s08770.13e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.13e-62RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]